Model info
Transcription factorRarb
ModelRARB_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length11
Quality
D
Motif rank
0
ConsensusvAGGTCAnvRv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words25
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRetinoic acid receptors (NR1B){2.1.2.1}
MGI97857
EntrezGene218772
UniProt IDRARB_MOUSE
UniProt ACP22605
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.06644
0.0005 5.644075
0.0001 7.6521349999999995
GTEx tissue expression atlas Rarb expression
Motifs in JASPAR
PCM
ACGT
013.8256.7229.9090.811
0217.4420.03.8250.0
030.00.021.2670.0
040.00.020.2241.043
050.00.00.021.267
060.021.2670.00.0
0721.2670.00.00.0
084.7524.2888.4023.825
096.7224.2888.0552.202
106.9545.3318.9820.0
115.366.9836.8092.115
PWM
ACGT
01-0.2820.2080.563-1.351
021.097-2.074-0.282-2.074
03-2.074-2.0741.287-2.074
04-2.074-2.0741.239-1.213
05-2.074-2.074-2.0741.287
06-2.0741.287-2.074-2.074
071.287-2.074-2.074-2.074
08-0.098-0.1850.41-0.282
090.208-0.1850.372-0.718
100.2380.0020.472-2.074
110.0070.2420.219-0.748