Model info
Transcription factorRfx1
ModelRFX1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length23
Quality
A
Motif rank
0
ConsensusbbbbSbGTTGCCWdGGvvMSvvb
Best auROC (human)0.698504802876159
Best auROC (mouse)0.9944157218372415
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)7
Aligned words440
TF familyRFX-related factors{3.3.3}
TF subfamilyRFX1 (EF-C){3.3.3.0.1}
MGI105982
EntrezGene19724
UniProt IDRFX1_MOUSE
UniProt ACP48377
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.4833100000000001
0.0005 3.8932599999999997
0.0001 9.03266
GTEx tissue expression atlas Rfx1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
017.14312.59421.6553.32417.3256.39649.26639.13525.507100.14335.20916.6135.02215.19623.72212.37
021.82620.4429.8392.8869.33591.59247.38636.0168.75861.4943.35316.253.99732.41424.56210.468
031.9168.37711.5882.03418.05674.15268.90244.82611.97455.57860.50617.0832.76723.54329.5999.711
041.8419.6359.1044.1359.31488.88545.15318.2986.404112.15542.02210.0131.88837.11721.01613.633
051.0437.92910.4730.042.89374.15786.1254.6236.96961.20139.269.8664.8457.05930.2143.961
061.0261.0453.6840.04.1040.0146.2420.00.00.0166.0670.00.980.066.4720.999
070.00.00.06.1090.00.00.01.041.95616.42.044412.0650.00.00.00.999
080.01.0460.00.9091.0615.6430.09.6951.0161.0280.00.05.91774.8041.885337.606
093.10.04.8950.01.8951.04464.76914.8140.00.00.9260.95913.8174.223310.77319.399
100.018.8110.00.00.05.2670.00.00.0345.1612.87133.3310.035.1720.00.0
110.00.00.00.00.0316.1951.76886.4481.0581.8130.00.00.029.3510.03.98
120.00.01.0580.0248.18826.89425.52746.750.9010.00.8670.075.2581.79112.2241.155
1345.39115.20989.111174.6362.7174.31110.83410.8233.744.99719.03911.915.9362.1716.47313.325
141.9640.065.820.03.9550.022.7320.02.9680.872131.6180.012.2770.0198.4060.0
150.00.021.1640.00.00.00.8720.050.22221.939340.5655.8510.00.00.00.0
160.93525.05922.1972.03112.1141.985.8871.95768.42162.3968.41463.3761.9420.8623.0470.0
1727.7733.76250.8261.05179.72415.50974.96720.09258.02222.07715.3644.08220.4294.6626.49715.778
1887.18448.40944.7985.55719.8885.79717.4532.87131.06825.2439.4411.90222.0175.0616.8667.059
1915.576221.3768.00715.1989.07140.12522.75812.5565.25451.5914.8936.824.0669.3712.0211.93
204.93918.0979.0971.83463.80297.085136.32925.2463.83410.86130.7022.2822.2651.9328.5793.73
2118.07212.09441.363.31328.99826.02259.3213.63326.61869.719100.647.7314.3317.43820.380.943
2211.56420.25932.97813.21819.73527.69139.78728.0620.17690.35978.13133.0354.7219.0077.9343.958
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.311-0.766-0.237-2.02-0.4560.710.5760.347-0.0761.2810.243-0.496-1.643-0.584-0.147-0.784
02-2.538-0.2930.079-2.146-1.0561.1920.5370.265-1.1170.7960.449-0.518-1.8530.161-0.113-0.945
03-2.498-1.159-0.847-2.448-0.4150.9820.9090.482-0.8150.6950.78-0.469-2.183-0.1540.071-1.018
04-2.532-0.333-1.08-1.822-1.0581.1620.489-0.402-1.4151.3940.418-0.988-2.510.295-0.266-0.689
05-2.976-1.212-0.945-4.2960.4380.9821.1310.678-1.3350.7910.351-1.002-1.676-1.3230.092-1.861
06-2.988-2.9790.661-4.296-1.829-4.2961.659-4.296-4.296-4.2961.785-4.296-3.022-4.2960.873-3.008
07-4.296-4.296-4.296-1.459-4.296-4.296-4.296-2.979-2.481-0.509-2.4442.693-4.296-4.296-4.296-3.008
08-4.296-2.974-4.296-3.075-2.963-1.534-4.296-1.019-2.995-2.987-4.296-4.296-1.4890.991-2.5112.494
09-2.082-4.296-1.666-4.296-2.507-2.9760.847-0.608-4.296-4.296-3.062-3.037-0.676-1.8032.411-0.345
10-4.296-0.375-4.296-4.296-4.296-1.598-4.296-4.296-4.2962.516-2.150.189-4.2960.242-4.296-4.296
11-4.296-4.296-4.296-4.296-4.2962.428-2.5641.135-2.966-2.544-4.296-4.296-4.2960.063-4.296-1.857
12-4.296-4.296-2.966-4.2962.186-0.023-0.0750.524-3.081-4.296-3.108-4.2960.997-2.554-0.795-2.9
130.494-0.5831.1651.836-2.199-1.784-0.912-0.913-1.913-1.647-0.363-0.821-0.537-2.393-0.505-0.711
14-2.477-4.2960.863-4.296-1.862-4.296-0.189-4.296-2.121-3.1051.553-4.296-0.791-4.2961.963-4.296
15-4.296-4.296-0.259-4.296-4.296-4.296-3.105-4.2960.595-0.2242.502-1.5-4.296-4.296-4.296-4.296
16-3.055-0.093-0.212-2.449-0.804-2.47-1.494-2.480.9021.7630.9020.826-2.487-3.112-2.097-4.296
170.008-1.9080.607-2.9711.054-0.5640.993-0.310.738-0.218-0.573-1.834-0.294-1.712-0.038-0.547
181.1430.5580.481-1.548-0.32-1.508-0.448-2.1511.549-0.086-1.045-2.504-0.22-1.635-1.349-1.322
19-0.5592.072-1.203-0.583-1.0830.372-0.188-0.769-1.60.621-0.603-1.355-1.837-1.052-2.453-2.492
20-1.658-0.413-1.08-2.5340.8321.251.589-0.086-1.891-0.910.107-2.35-2.357-2.4920.037-1.916
21-0.414-0.8060.402-2.0230.051-0.0560.76-0.689-0.0330.9211.286-1.236-1.779-1.273-0.296-3.049
22-0.849-0.3020.178-0.719-0.3280.0050.3640.019-0.3061.1791.0340.18-1.7-1.09-1.211-1.862