Model info
Transcription factorRfx1
ModelRFX1_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusbGTTGCCWdGR
Best auROC (human)0.574
Best auROC (mouse)0.994
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)7
Aligned words500
TF familyRFX-related factors {3.3.3}
TF subfamilyRFX1 (EF-C) {3.3.3.0.1}
MGIMGI:105982
EntrezGeneGeneID:19724
(SSTAR profile)
UniProt IDRFX1_MOUSE
UniProt ACP48377
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.893275
0.0005 4.982855000000001
0.0001 7.21542
GTEx tissue expression atlas Rfx1 expression
Motifs in JASPAR
PCM
ACGT
0150.0132.0161.0157.0
024.02.0494.00.0
030.06.03.0491.0
0413.038.02.0447.0
0537.08.0410.045.0
060.0472.01.027.0
070.0329.00.0171.0
08388.016.026.070.0
0998.013.0158.0231.0
1020.03.0475.02.0
1175.055.0347.023.0
PWM
ACGT
01-0.8980.0540.250.225
02-3.126-3.5731.365-4.4
03-4.4-2.819-3.3251.359
04-2.163-1.163-3.5731.265
05-1.189-2.5841.179-1.0
06-4.41.32-3.903-1.489
07-4.40.96-4.40.31
081.124-1.975-1.525-0.57
09-0.24-2.1630.2320.608
10-1.77-3.3251.326-3.573
11-0.503-0.8051.013-1.64