Model info
Transcription factorRfx2
ModelRFX2_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusbGTTGCCWdGG
Best auROC (human)0.9599249159738742
Best auROC (mouse)0.9974091722774329
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)7
Aligned words500
TF familyRFX-related factors{3.3.3}
TF subfamilyRFX2{3.3.3.0.2}
MGI106583
EntrezGene19725
UniProt IDRFX2_MOUSE
UniProt ACP48379
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.4666799999999998
0.0005 4.574975
0.0001 6.893090000000001
GTEx tissue expression atlas Rfx2 expression
Motifs in JASPAR
PCM
ACGT
0144.0180.0213.063.0
024.00.0495.01.0
031.04.01.0494.0
045.039.04.0452.0
0558.01.0404.037.0
061.0461.00.038.0
070.0365.01.0134.0
08384.019.043.054.0
0977.028.0130.0265.0
1026.02.0465.07.0
1160.042.0394.04.0
PWM
ACGT
01-1.0220.3610.528-0.673
02-3.126-4.41.367-3.903
03-3.903-3.126-3.9031.365
04-2.961-1.138-3.1261.276
05-0.754-3.9031.165-1.189
06-3.9031.296-4.4-1.163
07-4.41.063-3.9030.069
081.114-1.818-1.044-0.823
09-0.477-1.4540.0390.745
10-1.525-3.5731.305-2.694
11-0.721-1.0671.14-3.126