Model info
| Transcription factor | Rfx2 | ||||||||
| Model | RFX2_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bGTTGCCWdGG | ||||||||
| Best auROC (human) | 0.96 | ||||||||
| Best auROC (mouse) | 0.997 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX2 {3.3.3.0.2} | ||||||||
| MGI | MGI:106583 | ||||||||
| EntrezGene | GeneID:19725 (SSTAR profile) | ||||||||
| UniProt ID | RFX2_MOUSE | ||||||||
| UniProt AC | P48379 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rfx2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 44.0 | 180.0 | 213.0 | 63.0 |
| 02 | 4.0 | 0.0 | 495.0 | 1.0 |
| 03 | 1.0 | 4.0 | 1.0 | 494.0 |
| 04 | 5.0 | 39.0 | 4.0 | 452.0 |
| 05 | 58.0 | 1.0 | 404.0 | 37.0 |
| 06 | 1.0 | 461.0 | 0.0 | 38.0 |
| 07 | 0.0 | 365.0 | 1.0 | 134.0 |
| 08 | 384.0 | 19.0 | 43.0 | 54.0 |
| 09 | 77.0 | 28.0 | 130.0 | 265.0 |
| 10 | 26.0 | 2.0 | 465.0 | 7.0 |
| 11 | 60.0 | 42.0 | 394.0 | 4.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.022 | 0.361 | 0.528 | -0.673 |
| 02 | -3.126 | -4.4 | 1.367 | -3.903 |
| 03 | -3.903 | -3.126 | -3.903 | 1.365 |
| 04 | -2.961 | -1.138 | -3.126 | 1.276 |
| 05 | -0.754 | -3.903 | 1.165 | -1.189 |
| 06 | -3.903 | 1.296 | -4.4 | -1.163 |
| 07 | -4.4 | 1.063 | -3.903 | 0.069 |
| 08 | 1.114 | -1.818 | -1.044 | -0.823 |
| 09 | -0.477 | -1.454 | 0.039 | 0.745 |
| 10 | -1.525 | -3.573 | 1.305 | -2.694 |
| 11 | -0.721 | -1.067 | 1.14 | -3.126 |