Model info
Transcription factorRFX5
(GeneCards)
ModelRFX5_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusvbbvbbdGTYRCYRKGbvvv
Best auROC (human)0.973
Best auROC (mouse)
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)
Aligned words500
TF familyRFX-related factors {3.3.3}
TF subfamilyRFX5 {3.3.3.0.5}
HGNCHGNC:9986
EntrezGeneGeneID:5993
(SSTAR profile)
UniProt IDRFX5_HUMAN
UniProt ACP48382
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.00141
0.0005 4.9482099999999996
0.0001 6.937710000000001
GTEx tissue expression atlas RFX5 expression
ReMap ChIP-seq dataset list RFX5 datasets
Motifs in JASPAR
PCM
ACGT
0195.0109.0239.057.0
0264.080.0115.0241.0
0366.0267.092.075.0
04245.0105.098.052.0
0545.0167.0175.0113.0
0640.0287.057.0116.0
07128.034.0105.0233.0
0810.06.0480.04.0
095.040.027.0428.0
1045.067.08.0380.0
1175.022.0347.056.0
1212.0453.04.031.0
138.0217.010.0265.0
14313.08.0167.012.0
1564.018.0323.095.0
1625.028.0435.012.0
1771.0197.0157.075.0
18266.078.0105.051.0
19154.054.0260.032.0
20275.074.0110.041.0
PWM
ACGT
01-0.271-0.1350.642-0.771
02-0.658-0.439-0.0820.651
03-0.6280.752-0.302-0.503
040.667-0.172-0.24-0.86
05-1.00.2870.333-0.1
06-1.1140.824-0.771-0.074
070.023-1.27-0.1720.617
08-2.394-2.8191.336-3.126
09-2.961-1.114-1.4891.222
10-1.0-0.613-2.5841.104
11-0.503-1.6811.013-0.788
12-2.2341.279-3.126-1.358
13-2.5840.546-2.3940.745
140.91-2.5840.287-2.234
15-0.658-1.8680.942-0.271
16-1.561-1.4541.238-2.234
17-0.5560.450.225-0.503
180.749-0.464-0.172-0.879
190.206-0.8230.726-1.328
200.782-0.516-0.126-1.09