Model info
Transcription factorRORA
ModelRORA_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusvhbdRGGbCAvdR
Best auROC (human)0.6818119903270871
Best auROC (mouse)0.787508102301955
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyROR (NR1F){2.1.2.6}
HGNC10258
EntrezGene6095
UniProt IDRORA_HUMAN
UniProt ACP35398
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.358560000000001
0.0005 6.17151
0.0001 7.703965
GTEx tissue expression atlas RORA expression
ReMap ChIP-seq dataset list RORA datasets
Motifs in JASPAR
PCM
ACGT
01267.0114.073.046.0
02224.065.049.0162.0
0380.0197.0137.086.0
04126.035.082.0257.0
05275.08.0212.05.0
0636.02.0441.021.0
0710.03.0474.013.0
0837.086.0121.0256.0
091.0475.022.02.0
10481.04.05.010.0
11172.061.0228.039.0
12149.039.0213.099.0
13102.050.0305.043.0
PWM
ACGT
010.752-0.091-0.529-0.979
020.578-0.643-0.9180.256
03-0.4390.450.091-0.368
040.008-1.242-0.4150.714
050.782-2.5840.523-2.961
06-1.215-3.5731.252-1.725
07-2.394-3.3251.324-2.163
08-1.189-0.368-0.0320.711
09-3.9031.326-1.681-3.573
101.338-3.126-2.961-2.394
110.316-0.7050.595-1.138
120.174-1.1380.528-0.23
13-0.201-0.8980.885-1.044