Model info
Transcription factorRXRA
ModelRXRA_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
1
ConsensusvhRAGGTCAb
Best auROC (human)0.861315989733693
Best auROC (mouse)0.904806272970417
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words500
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyRetinoid X receptors (NR2B){2.1.3.1}
HGNC10477
EntrezGene6256
UniProt IDRXRA_HUMAN
UniProt ACP19793
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.307510000000001
0.0005 6.165945000000001
0.0001 7.726990000000001
GTEx tissue expression atlas RXRA expression
ReMap ChIP-seq dataset list RXRA datasets
Motifs in JASPAR
PCM
ACGT
01102.0216.0124.058.0
02256.065.057.0122.0
03185.064.0241.010.0
04395.02.095.08.0
0510.02.0486.02.0
066.07.0399.088.0
075.035.050.0410.0
081.0479.013.07.0
09473.06.02.019.0
1088.0112.0208.092.0
PWM
ACGT
01-0.2010.542-0.008-0.754
020.711-0.643-0.771-0.024
030.388-0.6580.651-2.394
041.142-3.573-0.271-2.584
05-2.394-3.5731.349-3.573
06-2.819-2.6941.152-0.346
07-2.961-1.242-0.8981.179
08-3.9031.334-2.163-2.694
091.322-2.819-3.573-1.818
10-0.346-0.1080.504-0.302