Model info
Transcription factorRxra
ModelRXRA_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length21
Quality
A
Motif rank
0
ConsensusddvdbvvdRAGKTCARGGbYR
Best auROC (human)0.782
Best auROC (mouse)0.943
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words499
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
MGIMGI:98214
EntrezGeneGeneID:20181
(SSTAR profile)
UniProt IDRXRA_MOUSE
UniProt ACP28700
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.24386
0.0005 5.27401
0.0001 7.43961
GTEx tissue expression atlas Rxra expression
Motifs in JASPAR
PCM
ACGT
01198.038.0192.071.0
02120.055.0224.0100.0
03101.078.0266.054.0
04155.068.0190.086.0
0565.0103.0112.0219.0
0689.0211.0117.082.0
07209.096.0124.070.0
08154.071.0179.095.0
09197.044.0247.011.0
10410.011.073.05.0
1128.04.0452.015.0
129.024.0195.0271.0
1315.029.027.0428.0
145.0455.034.05.0
15454.012.019.014.0
16386.025.063.025.0
1753.011.0417.018.0
1830.014.0428.027.0
1940.0132.065.0262.0
2017.0370.051.061.0
21350.029.064.056.0
PWM
ACGT
010.457-1.1610.427-0.554
02-0.038-0.8040.58-0.218
03-0.208-0.4620.751-0.821
040.215-0.5970.416-0.366
05-0.641-0.189-0.1060.557
06-0.3330.521-0.063-0.413
070.511-0.258-0.006-0.568
080.208-0.5540.357-0.269
090.452-1.020.677-2.309
101.181-2.309-0.527-2.959
11-1.452-3.1241.278-2.032
12-2.482-1.5980.4420.769
13-2.032-1.419-1.4871.224
14-2.9591.285-1.268-2.959
151.283-2.232-1.816-2.094
161.121-1.56-0.671-1.56
17-0.84-2.3091.198-1.866
18-1.387-2.0941.224-1.487
19-1.1120.056-0.6410.736
20-1.9181.079-0.877-0.703
211.024-1.419-0.656-0.786