Model info
Transcription factorRxra
ModelRXRA_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
A
Motif rank
1
ConsensusvdddvdbvvdRAGKTCAvRRhb
Best auROC (human)0.7340483418719648
Best auROC (mouse)0.9697834663579576
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words500
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyRetinoid X receptors (NR2B){2.1.3.1}
MGI98214
EntrezGene20181
UniProt IDRXRA_MOUSE
UniProt ACP28700
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.370559999999999
0.0005 5.39846
0.0001 7.51736
GTEx tissue expression atlas Rxra expression
Motifs in JASPAR
PCM
ACGT
01162.065.0237.036.0
0296.060.0276.068.0
03165.028.0243.064.0
04110.024.0206.0160.0
0558.0137.0274.031.0
06208.031.0198.063.0
0776.079.0119.0226.0
0875.0235.0126.064.0
09251.084.0100.065.0
10231.056.0151.062.0
11230.028.0225.017.0
12395.02.0100.03.0
1317.00.0479.04.0
146.00.0272.0222.0
1521.019.027.0433.0
166.0467.016.011.0
17487.05.03.05.0
18282.063.0106.049.0
1993.047.0329.031.0
2075.038.0333.054.0
2189.0127.088.0196.0
2269.0273.084.074.0
PWM
ACGT
010.256-0.6430.634-1.215
02-0.26-0.7210.785-0.599
030.275-1.4540.659-0.658
04-0.126-1.60.4950.244
05-0.7540.0910.778-1.358
060.504-1.3580.455-0.673
07-0.49-0.452-0.0490.587
08-0.5030.6260.008-0.658
090.691-0.392-0.22-0.643
100.608-0.7880.187-0.689
110.604-1.4540.582-1.92
121.142-3.573-0.22-3.325
13-1.92-4.41.334-3.126
14-2.819-4.40.7710.569
15-1.725-1.818-1.4891.234
16-2.8191.309-1.975-2.311
171.351-2.961-3.325-2.961
180.807-0.673-0.163-0.918
19-0.291-0.9580.96-1.358
20-0.503-1.1630.972-0.823
21-0.3350.016-0.3460.445
22-0.5840.774-0.392-0.516