Model info
Transcription factorRXRG
ModelRXRG_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length13
Quality
B
Motif rank
0
ConsensusbGTCAAAGGTCAh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words584
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyRetinoid X receptors (NR2B){2.1.3.1}
HGNC10479
EntrezGene6258
UniProt IDRXRG_HUMAN
UniProt ACP48443
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.8746099999999997
0.0005 3.343215
0.0001 6.2589950000000005
GTEx tissue expression atlas RXRG expression
ReMap ChIP-seq dataset list RXRG datasets
Motifs in JASPAR
PCM
ACGT
01102.04102.465345.61102.889
020.8490.424571.63980.092
034.0699.37950.467589.09
043.82583.76513.17952.24
05653.0040.00.00.0
06594.1662.61947.9458.274
07633.2230.84918.9320.0
080.00.424651.7310.849
090.4240.424596.14456.011
109.19511.50115.811616.497
112.971561.38249.46439.186
12605.9693.64442.7180.673
13190.564215.25667.043180.142
PWM
ACGT
01-0.464-0.460.745-0.456
02-4.201-4.391.246-0.702
03-3.367-2.707-1.1521.276
04-3.4111.267-2.411-1.119
051.379-4.622-4.622-4.622
061.285-3.661-1.202-2.813
071.348-4.201-2.082-4.622
08-4.622-4.391.377-4.201
09-4.39-4.391.288-1.051
10-2.724-2.531-2.2471.322
11-3.5811.228-1.172-1.396
121.304-3.444-1.313-4.275
130.1530.274-0.8760.098