Model info
Transcription factorSCRT2
ModelSCRT2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensusdhKCAACAGGTKb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words719
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilySnail-like factors{2.3.3.2}
HGNC15952
EntrezGene85508
UniProt IDSCRT2_HUMAN
UniProt ACQ9NQ03
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.687065
0.0005 2.58038
0.0001 5.78795
GTEx tissue expression atlas SCRT2 expression
ReMap ChIP-seq dataset list SCRT2 datasets
Motifs in JASPAR
PCM
ACGT
01280.5104.5210.5123.5
02215.25144.2568.25291.25
0363.566.5417.5171.5
040.0719.00.00.0
05717.02.00.00.0
06718.00.00.01.0
070.0719.00.00.0
08718.00.01.00.0
0941.00.0677.01.0
101.00.0718.00.0
110.50.50.5717.5
1261.015.0515.0128.0
13107.0148.0304.0160.0
PWM
ACGT
010.442-0.5360.157-0.371
020.179-0.218-0.9540.479
03-1.024-0.9790.838-0.047
04-4.7031.379-4.703-4.703
051.377-3.907-4.703-4.703
061.378-4.703-4.703-4.228
07-4.7031.379-4.703-4.703
081.378-4.703-4.228-4.703
09-1.448-4.7031.319-4.228
10-4.228-4.7031.378-4.703
11-4.438-4.438-4.4381.377
12-1.063-2.3891.047-0.336
13-0.513-0.1920.522-0.115