Model info
Transcription factorSix2
ModelSIX2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusKGWAAYhYRAbMYb
Best auROC (human)0.9627827743242434
Best auROC (mouse)0.9460781743789703
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)9
Aligned words500
TF familyHD-SINE factors{3.1.6}
TF subfamilySIX1-like factors{3.1.6.1}
MGI102778
EntrezGene20472
UniProt IDSIX2_MOUSE
UniProt ACQ62232
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.22671
0.0005 6.148759999999999
0.0001 7.939375
GTEx tissue expression atlas Six2 expression
Motifs in JASPAR
PCM
ACGT
0195.05.099.0301.0
024.01.0491.04.0
03284.035.020.0161.0
04434.038.08.020.0
05497.02.01.00.0
0627.0240.031.0202.0
07123.0201.042.0134.0
0861.087.051.0301.0
09110.017.0348.025.0
10497.02.01.00.0
1143.078.0186.0193.0
12233.0217.016.034.0
1370.0295.030.0105.0
1459.0192.0101.0148.0
PWM
ACGT
01-0.271-2.961-0.230.872
02-3.126-3.9031.359-3.126
030.814-1.242-1.770.25
041.236-1.163-2.584-1.77
051.371-3.573-3.903-4.4
06-1.4890.646-1.3580.475
07-0.0160.47-1.0670.069
08-0.705-0.357-0.8790.872
09-0.126-1.921.016-1.561
101.371-3.573-3.903-4.4
11-1.044-0.4640.3930.43
120.6170.546-1.975-1.27
13-0.570.852-1.389-0.172
14-0.7370.425-0.210.167