Model info
Transcription factorSix2
ModelSIX2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusKGWAAYhYRAbMYb
Best auROC (human)0.963
Best auROC (mouse)0.946
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)9
Aligned words500
TF familyHD-SINE factors {3.1.6}
TF subfamilySIX1-like factors {3.1.6.1}
MGIMGI:102778
EntrezGeneGeneID:20472
(SSTAR profile)
UniProt IDSIX2_MOUSE
UniProt ACQ62232
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.22671
0.0005 6.148759999999999
0.0001 7.939375
GTEx tissue expression atlas Six2 expression
Motifs in JASPAR
PCM
ACGT
0195.05.099.0301.0
024.01.0491.04.0
03284.035.020.0161.0
04434.038.08.020.0
05497.02.01.00.0
0627.0240.031.0202.0
07123.0201.042.0134.0
0861.087.051.0301.0
09110.017.0348.025.0
10497.02.01.00.0
1143.078.0186.0193.0
12233.0217.016.034.0
1370.0295.030.0105.0
1459.0192.0101.0148.0
PWM
ACGT
01-0.271-2.961-0.230.872
02-3.126-3.9031.359-3.126
030.814-1.242-1.770.25
041.236-1.163-2.584-1.77
051.371-3.573-3.903-4.4
06-1.4890.646-1.3580.475
07-0.0160.47-1.0670.069
08-0.705-0.357-0.8790.872
09-0.126-1.921.016-1.561
101.371-3.573-3.903-4.4
11-1.044-0.4640.3930.43
120.6170.546-1.975-1.27
13-0.570.852-1.389-0.172
14-0.7370.425-0.210.167