Transcription factor | Six4 | ||||||||
Model | SIX4_MOUSE.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | ndGdMAbhbRAbhbn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.916 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 4 | ||||||||
Aligned words | 428 | ||||||||
TF family | HD-SINE factors {3.1.6} | ||||||||
TF subfamily | SIX4-like factors {3.1.6.3} | ||||||||
MGI | MGI:106034 | ||||||||
EntrezGene | GeneID:20474 (SSTAR profile) | ||||||||
UniProt ID | SIX4_MOUSE | ||||||||
UniProt AC | Q61321 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Six4 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 38.0 | 7.0 | 13.0 | 44.0 | 29.0 | 7.0 | 10.0 | 95.0 | 20.0 | 3.0 | 18.0 | 51.0 | 16.0 | 3.0 | 26.0 | 43.0 |
02 | 0.0 | 3.0 | 95.0 | 5.0 | 2.0 | 1.0 | 17.0 | 0.0 | 0.0 | 3.0 | 63.0 | 1.0 | 6.0 | 9.0 | 217.0 | 1.0 |
03 | 2.0 | 1.0 | 4.0 | 1.0 | 11.0 | 2.0 | 0.0 | 3.0 | 185.0 | 29.0 | 54.0 | 124.0 | 2.0 | 0.0 | 2.0 | 3.0 |
04 | 149.0 | 37.0 | 6.0 | 8.0 | 19.0 | 8.0 | 1.0 | 4.0 | 49.0 | 5.0 | 3.0 | 3.0 | 97.0 | 23.0 | 4.0 | 7.0 |
05 | 295.0 | 11.0 | 4.0 | 4.0 | 69.0 | 3.0 | 0.0 | 1.0 | 13.0 | 0.0 | 1.0 | 0.0 | 16.0 | 4.0 | 0.0 | 2.0 |
06 | 30.0 | 192.0 | 43.0 | 128.0 | 2.0 | 11.0 | 1.0 | 4.0 | 0.0 | 4.0 | 0.0 | 1.0 | 2.0 | 1.0 | 0.0 | 4.0 |
07 | 6.0 | 17.0 | 9.0 | 2.0 | 41.0 | 93.0 | 19.0 | 55.0 | 11.0 | 22.0 | 6.0 | 5.0 | 29.0 | 55.0 | 20.0 | 33.0 |
08 | 11.0 | 6.0 | 28.0 | 42.0 | 32.0 | 41.0 | 12.0 | 102.0 | 2.0 | 15.0 | 11.0 | 26.0 | 13.0 | 15.0 | 21.0 | 46.0 |
09 | 11.0 | 8.0 | 38.0 | 1.0 | 19.0 | 16.0 | 38.0 | 4.0 | 9.0 | 4.0 | 55.0 | 4.0 | 15.0 | 11.0 | 186.0 | 4.0 |
10 | 46.0 | 4.0 | 4.0 | 0.0 | 35.0 | 3.0 | 1.0 | 0.0 | 293.0 | 16.0 | 5.0 | 3.0 | 8.0 | 3.0 | 1.0 | 1.0 |
11 | 50.0 | 138.0 | 119.0 | 75.0 | 3.0 | 17.0 | 4.0 | 2.0 | 2.0 | 8.0 | 0.0 | 1.0 | 0.0 | 0.0 | 4.0 | 0.0 |
12 | 25.0 | 6.0 | 19.0 | 5.0 | 77.0 | 43.0 | 10.0 | 33.0 | 64.0 | 33.0 | 19.0 | 11.0 | 21.0 | 36.0 | 10.0 | 11.0 |
13 | 24.0 | 97.0 | 39.0 | 27.0 | 12.0 | 58.0 | 1.0 | 47.0 | 6.0 | 38.0 | 10.0 | 4.0 | 5.0 | 49.0 | 3.0 | 3.0 |
14 | 10.0 | 12.0 | 18.0 | 7.0 | 46.0 | 90.0 | 36.0 | 70.0 | 6.0 | 15.0 | 21.0 | 11.0 | 7.0 | 19.0 | 36.0 | 19.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.359 | -1.29 | -0.695 | 0.504 | 0.091 | -1.29 | -0.949 | 1.269 | -0.275 | -2.072 | -0.378 | 0.65 | -0.493 | -2.072 | -0.016 | 0.481 |
02 | -4.262 | -2.072 | 1.269 | -1.607 | -2.423 | -2.968 | -0.434 | -4.262 | -4.262 | -2.072 | 0.86 | -2.968 | -1.436 | -1.051 | 2.093 | -2.968 |
03 | -2.423 | -2.968 | -1.812 | -2.968 | -0.857 | -2.423 | -4.262 | -2.072 | 1.933 | 0.091 | 0.707 | 1.534 | -2.423 | -4.262 | -2.423 | -2.072 |
04 | 1.718 | 0.332 | -1.436 | -1.163 | -0.325 | -1.163 | -2.968 | -1.812 | 0.611 | -1.607 | -2.072 | -2.072 | 1.29 | -0.137 | -1.812 | -1.29 |
05 | 2.399 | -0.857 | -1.812 | -1.812 | 0.951 | -2.072 | -4.262 | -2.968 | -0.695 | -4.262 | -2.968 | -4.262 | -0.493 | -1.812 | -4.262 | -2.423 |
06 | 0.125 | 1.97 | 0.481 | 1.566 | -2.423 | -0.857 | -2.968 | -1.812 | -4.262 | -1.812 | -4.262 | -2.968 | -2.423 | -2.968 | -4.262 | -1.812 |
07 | -1.436 | -0.434 | -1.051 | -2.423 | 0.434 | 1.248 | -0.325 | 0.725 | -0.857 | -0.181 | -1.436 | -1.607 | 0.091 | 0.725 | -0.275 | 0.219 |
08 | -0.857 | -1.436 | 0.057 | 0.458 | 0.188 | 0.434 | -0.773 | 1.34 | -2.423 | -0.556 | -0.857 | -0.016 | -0.695 | -0.556 | -0.227 | 0.548 |
09 | -0.857 | -1.163 | 0.359 | -2.968 | -0.325 | -0.493 | 0.359 | -1.812 | -1.051 | -1.812 | 0.725 | -1.812 | -0.556 | -0.857 | 1.939 | -1.812 |
10 | 0.548 | -1.812 | -1.812 | -4.262 | 0.277 | -2.072 | -2.968 | -4.262 | 2.392 | -0.493 | -1.607 | -2.072 | -1.163 | -2.072 | -2.968 | -2.968 |
11 | 0.631 | 1.641 | 1.493 | 1.034 | -2.072 | -0.434 | -1.812 | -2.423 | -2.423 | -1.163 | -4.262 | -2.968 | -4.262 | -4.262 | -1.812 | -4.262 |
12 | -0.055 | -1.436 | -0.325 | -1.607 | 1.06 | 0.481 | -0.949 | 0.219 | 0.876 | 0.219 | -0.325 | -0.857 | -0.227 | 0.305 | -0.949 | -0.857 |
13 | -0.095 | 1.29 | 0.384 | 0.021 | -0.773 | 0.778 | -2.968 | 0.569 | -1.436 | 0.359 | -0.949 | -1.812 | -1.607 | 0.611 | -2.072 | -2.072 |
14 | -0.949 | -0.773 | -0.378 | -1.29 | 0.548 | 1.215 | 0.305 | 0.965 | -1.436 | -0.556 | -0.227 | -0.857 | -1.29 | -0.325 | 0.305 | -0.325 |