Model info
Transcription factorSmad2
ModelSMAD2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnbTGTYTGbbhhbn
Best auROC (human)0.8488805798044919
Best auROC (mouse)0.9005072724624811
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)26
Aligned words501
TF familySMAD factors{7.1.1}
TF subfamilyRegulatory Smads (R-Smad){7.1.1.1}
MGI108051
EntrezGene17126
UniProt IDSMAD2_MOUSE
UniProt ACQ62432
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.791360000000001
0.0005 12.62081
0.0001 15.935760000000002
GTEx tissue expression atlas Smad2 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0112.044.040.026.011.062.016.012.08.065.023.07.014.089.050.020.0
020.01.00.044.02.04.05.0249.01.03.02.0123.01.00.01.063.0
030.00.04.00.00.00.08.00.00.01.07.00.01.02.0474.02.0
040.00.00.01.00.00.00.03.012.044.024.0413.00.00.00.02.0
050.07.02.03.04.040.00.00.00.017.03.04.05.0224.039.0151.0
060.00.01.08.04.01.03.0280.00.00.01.043.01.00.04.0153.0
070.00.05.00.00.00.01.00.00.00.09.00.033.031.0417.03.0
080.07.06.020.03.017.04.07.026.0132.0117.0157.00.01.00.02.0
094.07.06.012.010.081.05.061.016.049.041.021.014.065.037.070.0
1013.013.04.014.046.053.03.0100.018.021.07.043.09.034.011.0110.0
1120.019.028.019.053.021.03.044.07.09.01.08.040.039.045.0143.0
1213.028.058.021.021.028.05.034.07.037.015.018.012.068.049.085.0
137.04.013.029.037.053.011.060.035.032.024.036.039.038.048.033.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.9360.3410.246-0.179-1.020.681-0.656-0.936-1.3260.728-0.3-1.452-0.7861.0410.467-0.437
02-4.398-3.124-4.3980.341-2.582-1.973-1.7682.067-3.124-2.232-2.5821.363-3.124-4.398-3.1240.697
03-4.398-4.398-1.973-4.398-4.398-4.398-1.326-4.398-4.398-3.124-1.452-4.398-3.124-2.5822.71-2.582
04-4.398-4.398-4.398-3.124-4.398-4.398-4.398-2.232-0.9360.341-0.2582.572-4.398-4.398-4.398-2.582
05-4.398-1.452-2.582-2.232-1.9730.246-4.398-4.398-4.398-0.597-2.232-1.973-1.7681.9610.2211.567
06-4.398-4.398-3.124-1.326-1.973-3.124-2.2322.184-4.398-4.398-3.1240.318-3.124-4.398-1.9731.581
07-4.398-4.398-1.768-4.398-4.398-4.398-3.124-4.398-4.398-4.398-1.213-4.3980.056-0.0062.582-2.232
08-4.398-1.452-1.598-0.437-2.232-0.597-1.973-1.452-0.1791.4331.3131.606-4.398-3.124-4.398-2.582
09-1.973-1.452-1.598-0.936-1.1120.947-1.7680.665-0.6560.4470.271-0.39-0.7860.7280.1690.802
10-0.858-0.858-1.973-0.7860.3850.525-2.2321.157-0.541-0.39-1.4520.318-1.2130.085-1.021.252
11-0.437-0.488-0.106-0.4880.525-0.39-2.2320.341-1.452-1.213-3.124-1.3260.2460.2210.3631.513
12-0.858-0.1060.615-0.39-0.39-0.106-1.7680.085-1.4520.169-0.719-0.541-0.9360.7730.4470.995
13-1.452-1.973-0.858-0.0720.1690.525-1.020.6480.1140.025-0.2580.1420.2210.1950.4270.056