Model info
Transcription factorSMAD3
ModelSMAD3_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
B
Motif rank
0
ConsensusvbYTShCWSCWb
Best auROC (human)0.8064247264509777
Best auROC (mouse)0.7065331899900795
Peak sets in benchmark (human)34
Peak sets in benchmark (mouse)30
Aligned words500
TF familySMAD factors{7.1.1}
TF subfamilyRegulatory Smads (R-Smad){7.1.1.1}
HGNC6769
EntrezGene4088
UniProt IDSMAD3_HUMAN
UniProt ACP84022
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.339309999999999
0.0005 5.96137
0.0001 7.16828
GTEx tissue expression atlas SMAD3 expression
ReMap ChIP-seq dataset list SMAD3 datasets
Motifs in JASPAR
PCM
ACGT
0182.0182.0157.079.0
0255.0136.084.0225.0
0332.0348.030.090.0
04108.02.07.0383.0
0535.0147.0277.041.0
06106.0156.053.0185.0
0719.0435.04.042.0
08233.059.011.0197.0
094.0283.0166.047.0
1016.0456.07.021.0
11176.028.02.0294.0
1236.0136.0247.081.0
PWM
ACGT
01-0.4150.3720.225-0.452
02-0.8050.083-0.3920.582
03-1.3281.016-1.389-0.324
04-0.144-3.573-2.6941.111
05-1.2420.160.789-1.09
06-0.1630.219-0.8410.388
07-1.8181.238-3.126-1.067
080.617-0.737-2.3110.45
09-3.1260.810.281-0.958
10-1.9751.285-2.694-1.725
110.339-1.454-3.5730.848
12-1.2150.0830.675-0.427