Model info
Transcription factorSmarca5
ModelSMCA5_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
C
Motif rank
0
ConsensusWGGMvKnSRWTGGAR
Best auROC (human)0.753925159766029
Best auROC (mouse)0.7412468106551702
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)2
Aligned words419
TF familyMyb/SANT domain factors{3.5.1}
TF subfamilySMARCA-like factors{3.5.1.5}
MGI1935129
EntrezGene93762
UniProt IDSMCA5_MOUSE
UniProt ACQ91ZW3
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.946009999999999
0.0005 5.874409999999999
0.0001 7.818910000000001
GTEx tissue expression atlas Smarca5 expression
Motifs in JASPAR
PCM
ACGT
0187.010.038.0268.0
0224.00.0343.036.0
0318.017.0362.06.0
04305.075.010.013.0
05204.092.075.032.0
0632.037.069.0265.0
0781.0114.0127.081.0
0861.071.0257.014.0
09289.018.074.022.0
10313.020.025.045.0
1123.08.053.0319.0
1221.07.0365.010.0
1316.055.0321.011.0
14336.035.011.021.0
15270.014.0103.016.0
PWM
ACGT
01-0.144-2.185-0.9510.969
02-1.389-4.2221.215-1.003
03-1.657-1.711.268-2.613
041.098-0.29-2.185-1.953
050.698-0.089-0.29-1.116
06-1.116-0.977-0.3720.958
07-0.2150.1220.229-0.215
08-0.492-0.3440.927-1.887
091.044-1.657-0.303-1.47
101.124-1.559-1.35-0.788
11-1.429-2.376-0.6291.142
12-1.514-2.4871.277-2.185
13-1.765-0.5931.149-2.102
141.194-1.03-2.102-1.514
150.977-1.8870.022-1.765