Model info
Transcription factorSNAI1
ModelSNAI1_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
C
Motif rank
0
ConsensusvCAGGTGb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words5
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilySnail-like factors{2.3.3.2}
HGNC11128
EntrezGene6615
UniProt IDSNAI1_HUMAN
UniProt ACO95863
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.877625
0.0005 5.2235700000000005
0.0001 6.8922
GTEx tissue expression atlas SNAI1 expression
ReMap ChIP-seq dataset list SNAI1 datasets
Motifs in JASPAR
PCM
ACGT
010.9822.4111.3390.268
020.05.00.00.0
035.00.00.00.0
040.00.05.00.0
050.00.05.00.0
060.00.00.05.0
070.00.05.00.0
080.2680.9822.4111.339
PWM
ACGT
01-0.1770.5320.053-0.902
02-1.4131.185-1.413-1.413
031.185-1.413-1.413-1.413
04-1.413-1.4131.185-1.413
05-1.413-1.4131.185-1.413
06-1.413-1.413-1.4131.185
07-1.413-1.4131.185-1.413
08-0.902-0.1770.5320.053