Model info
Transcription factorSNAI2
ModelSNAI2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusndRCAGGTGYnn
Best auROC (human)0.9848415733106589
Best auROC (mouse)0.8926490625692932
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)3
Aligned words517
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilySnail-like factors{2.3.3.2}
HGNC11094
EntrezGene6591
UniProt IDSNAI2_HUMAN
UniProt ACO43623
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.8749599999999997
0.0005 5.932185
0.0001 10.67052
GTEx tissue expression atlas SNAI2 expression
ReMap ChIP-seq dataset list SNAI2 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0127.012.057.03.082.04.053.025.059.020.044.07.029.04.060.014.0
0280.00.0117.00.024.00.016.00.0100.02.0112.00.025.00.024.00.0
030.0229.00.00.01.01.00.00.00.0269.00.00.00.00.00.00.0
041.00.00.00.0499.00.00.00.00.00.00.00.00.00.00.00.0
050.00.0500.00.00.00.00.00.00.00.00.00.00.00.00.00.0
060.00.00.00.00.00.00.00.00.00.0500.00.00.00.00.00.0
070.00.00.00.00.00.00.00.00.00.00.0500.00.00.00.00.0
080.00.00.00.00.00.00.00.00.00.00.00.00.00.0497.03.0
090.00.00.00.00.00.00.00.01.0287.095.0114.00.00.02.01.0
101.00.00.00.0115.068.042.062.053.018.019.07.018.030.028.039.0
1130.046.056.055.027.024.011.054.011.028.029.021.010.021.037.040.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.144-0.9380.595-2.2340.957-1.9750.523-0.220.63-0.4390.339-1.454-0.074-1.9750.646-0.788
020.932-4.41.311-4.4-0.26-4.4-0.658-4.41.155-2.5841.268-4.4-0.22-4.4-0.26-4.4
03-4.41.981-4.4-4.4-3.126-3.126-4.4-4.4-4.42.142-4.4-4.4-4.4-4.4-4.4-4.4
04-3.126-4.4-4.4-4.42.759-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
05-4.4-4.42.761-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
06-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.761-4.4-4.4-4.4-4.4-4.4
07-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.761-4.4-4.4-4.4-4.4
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.755-2.234
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.1262.2061.1041.285-4.4-4.4-2.584-3.126
10-3.126-4.4-4.4-4.41.2940.7710.2930.6790.523-0.543-0.49-1.454-0.543-0.04-0.1080.219
11-0.040.3830.5780.56-0.144-0.26-1.0220.542-1.022-0.108-0.074-0.392-1.114-0.3920.1670.244