Model info
Transcription factorSOX17
ModelSOX17_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
0
ConsensusbCCATYKTbbb
Best auROC (human)0.8347739627302879
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words500
TF familySOX-related factors{4.1.1}
TF subfamilyGroup F{4.1.1.6}
HGNC18122
EntrezGene64321
UniProt IDSOX17_HUMAN
UniProt ACQ9H6I2
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.648465
0.0005 6.38035
0.0001 7.8887599999999996
GTEx tissue expression atlas SOX17 expression
ReMap ChIP-seq dataset list SOX17 datasets
Motifs in JASPAR
PCM
ACGT
0157.0142.0213.088.0
0216.0403.046.035.0
0320.0400.02.078.0
04444.08.02.046.0
052.010.05.0483.0
064.059.056.0381.0
0711.2533.25310.25145.25
0814.2511.257.25467.25
0967.2568.25138.25226.25
1037.25145.25114.25203.25
1165.25118.2598.25218.25
PWM
ACGT
01-0.7710.1260.528-0.346
02-1.9751.162-0.979-1.242
03-1.771.155-3.573-0.464
041.259-2.584-3.573-0.979
05-3.573-2.394-2.9611.343
06-3.126-0.737-0.7881.106
07-2.291-1.2910.9020.148
08-2.08-2.291-2.6651.31
09-0.609-0.5950.10.588
10-1.1820.148-0.0890.481
11-0.639-0.055-0.2370.552