Model info
Transcription factorSOX9
ModelSOX9_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
B
Motif rank
0
ConsensusAAdRvnnbYWTTGTKY
Best auROC (human)0.7181183587575777
Best auROC (mouse)0.9814738162593991
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)25
Aligned words500
TF familySOX-related factors{4.1.1}
TF subfamilyGroup E{4.1.1.5}
HGNC11204
EntrezGene6662
UniProt IDSOX9_HUMAN
UniProt ACP48436
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.92821
0.0005 6.02781
0.0001 8.22356
GTEx tissue expression atlas SOX9 expression
ReMap ChIP-seq dataset list SOX9 datasets
Motifs in JASPAR
PCM
ACGT
01402.069.022.07.0
02440.02.028.030.0
03206.03.0144.0147.0
04107.025.0304.064.0
05117.097.0261.025.0
06117.0129.0169.085.0
0795.0141.0149.0115.0
0833.0214.0128.0125.0
0918.0398.031.053.0
10201.039.07.0253.0
110.068.047.0385.0
120.00.00.0500.0
132.02.0495.01.0
146.01.00.0493.0
1519.066.097.0318.0
1628.0283.035.0154.0
PWM
ACGT
011.16-0.584-1.681-2.694
021.25-3.573-1.454-1.389
030.495-3.3250.140.16
04-0.153-1.5610.881-0.658
05-0.065-0.250.73-1.561
06-0.0650.0310.298-0.38
07-0.2710.1190.174-0.082
08-1.2980.5330.0230.0
09-1.8681.15-1.358-0.841
100.47-1.138-2.6940.699
11-4.4-0.599-0.9581.117
12-4.4-4.4-4.41.377
13-3.573-3.5731.367-3.903
14-2.819-3.903-4.41.363
15-1.818-0.628-0.250.926
16-1.4540.81-1.2420.206