Model info
Transcription factorSPDEF
ModelSPDEF_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length14
Quality
D
Motif rank
0
ConsensusdWvCCGKATvWhvh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1928
TF familyEts-related factors{3.5.2}
TF subfamilySPDEF-like factors{3.5.2.7}
HGNC17257
EntrezGene25803
UniProt IDSPDEF_HUMAN
UniProt ACO95238
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.48496
0.0005 5.58746
0.0001 7.380415
GTEx tissue expression atlas SPDEF expression
ReMap ChIP-seq dataset list SPDEF datasets
Motifs in JASPAR
PCM
ACGT
01657.957304.226611.851314.688
02984.724185.86272.125646.01
03434.272932.22429.81992.41
049.2611863.8788.4847.098
05709.7051170.4475.7122.856
060.00.01888.7210.0
07189.11333.9351376.781288.892
081886.5580.00.02.163
09761.2280.520.521126.454
10326.213274.7871033.721254.0
111042.191179.016117.658549.856
12865.846371.033250.869400.974
13336.691387.594925.408239.028
14348.969321.085318.313900.355
PWM
ACGT
010.331-0.4370.258-0.404
020.733-0.926-1.8570.312
03-0.0830.678-0.094-1.615
04-3.751.37-3.822-3.966
050.4060.905-4.133-4.605
06-5.527-5.5271.383-5.527
07-0.909-2.5831.068-0.489
081.382-5.527-5.527-4.763
090.476-5.284-5.2840.867
10-0.368-0.5390.781-0.617
110.79-0.963-1.3780.152
120.605-0.24-0.629-0.163
13-0.337-0.1970.671-0.677
14-0.301-0.384-0.3920.644