Model info
Transcription factorSrf
ModelSRF_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensushKbCCWTWTWWGGbhdb
Best auROC (human)0.9495726718880612
Best auROC (mouse)0.9855633546162983
Peak sets in benchmark (human)46
Peak sets in benchmark (mouse)37
Aligned words374
TF familyResponders to external signals (SRF/RLM1){5.1.2}
TF subfamilySRF{5.1.2.0.1}
MGI106658
EntrezGene20807
UniProt IDSRF_MOUSE
UniProt ACQ9JM73
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.71416
0.0005 5.7267600000000005
0.0001 7.8334600000000005
GTEx tissue expression atlas Srf expression
Motifs in JASPAR
PCM
ACGT
0145.077.036.0216.0
0228.036.082.0228.0
0324.0117.095.0138.0
044.0357.04.09.0
053.0355.00.016.0
06121.017.02.0234.0
0724.012.014.0324.0
08238.018.015.0103.0
0910.018.05.0341.0
10164.025.09.0176.0
1168.09.014.0283.0
1246.03.0320.05.0
1312.01.0352.09.0
1446.0205.069.054.0
15101.0168.019.086.0
16199.038.044.093.0
1759.096.067.0152.0
PWM
ACGT
01-0.715-0.191-0.930.828
02-1.17-0.93-0.1290.882
03-1.3160.2210.0160.384
04-2.8521.328-2.852-2.204
05-3.0541.323-4.161-1.693
060.254-1.637-3.3060.908
07-1.316-1.952-1.8141.232
080.925-1.584-1.7510.095
09-2.113-1.584-2.6851.283
100.555-1.277-2.2040.625
11-0.313-2.204-1.8141.097
12-0.693-3.0541.219-2.685
13-1.952-3.6451.314-2.204
14-0.6930.777-0.298-0.538
150.0760.579-1.534-0.082
160.747-0.878-0.736-0.005
17-0.4510.026-0.3270.48