Model info
Transcription factorSry
ModelSRY_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length9
Quality
B
Motif rank
0
ConsensusbWTTGTWWh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words108
TF familySOX-related factors{4.1.1}
TF subfamilyGroup A{4.1.1.1}
MGI98660
EntrezGene21674
UniProt IDSRY_MOUSE
UniProt ACQ05738
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.83814
0.0005 6.435045000000001
0.0001 7.767995000000001
GTEx tissue expression atlas Sry expression
Motifs in JASPAR
PCM
ACGT
0111.26730.8215.22850.685
0239.63.964.80559.634
038.4170.4974.45794.628
0410.2570.4973.26493.982
050.07.9298.291.79
065.9650.03.77898.256
0720.7954.3413.67979.186
0828.15110.2247.53962.085
0936.60226.1312.83442.434
PWM
ACGT
01-0.8180.127-0.5410.61
020.37-1.703-1.5510.769
03-1.078-2.827-1.6111.224
04-0.902-2.827-1.8491.217
05-3.181-1.1311.261-2.253
06-1.373-3.181-1.7391.261
07-0.249-1.631-1.7591.048
080.04-0.905-1.1740.809
090.293-0.031-1.9510.437