Model info
Transcription factorRBPJ
ModelSUH_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusvbbSWGRGAAv
Best auROC (human)0.9252593153459968
Best auROC (mouse)0.9734332484939736
Peak sets in benchmark (human)25
Peak sets in benchmark (mouse)6
Aligned words500
TF familyCSL-related factors{6.1.4}
TF subfamilyM{6.1.4.1}
HGNC5724
EntrezGene3516
UniProt IDSUH_HUMAN
UniProt ACQ06330
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.014525
0.0005 5.852645000000001
0.0001 7.438880000000001
GTEx tissue expression atlas RBPJ expression
ReMap ChIP-seq dataset list RBPJ datasets
Motifs in JASPAR
PCM
ACGT
01158.090.0180.072.0
0219.0148.0240.093.0
0326.0243.0106.0125.0
0432.0157.0301.010.0
0581.045.013.0361.0
0610.01.0479.010.0
07105.04.0365.026.0
0827.02.0470.01.0
09492.03.04.01.0
10379.09.0106.06.0
11208.0158.0111.023.0
PWM
ACGT
010.232-0.3240.361-0.543
02-1.8180.1670.646-0.291
03-1.5250.659-0.1630.0
04-1.3280.2250.872-2.394
05-0.427-1.0-2.1631.053
06-2.394-3.9031.334-2.394
07-0.172-3.1261.063-1.525
08-1.489-3.5731.315-3.903
091.361-3.325-3.126-3.903
101.101-2.484-0.163-2.819
110.5040.232-0.117-1.64