Model info
Transcription factorTgif1
ModelTGIF1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
0
ConsensusTGACAGSdv
Best auROC (human)0.7862127341578095
Best auROC (mouse)0.9790079239855694
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words137
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyTGIF{3.1.4.6}
MGI1194497
EntrezGene21815
UniProt IDTGIF1_MOUSE
UniProt ACP70284
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.006349999999999
0.0005 5.929965
0.0001 7.8978649999999995
GTEx tissue expression atlas Tgif1 expression
Motifs in JASPAR
PCM
ACGT
012.02.01.0131.0
020.03.0133.00.0
03129.06.00.01.0
042.0132.01.01.0
05134.01.01.00.0
0614.04.0117.01.0
078.078.030.020.0
0828.019.020.069.0
0924.028.070.014.0
PWM
ACGT
01-2.39-2.39-2.7611.323
02-3.356-2.121.338-3.356
031.307-1.584-3.356-2.761
04-2.391.33-2.761-2.761
051.345-2.761-2.761-3.356
06-0.839-1.9081.211-2.761
07-1.340.81-0.121-0.507
08-0.187-0.555-0.5070.69
09-0.334-0.1870.704-0.839