Model info
Transcription factorTHRA
ModelTHA_HUMAN.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
1
ConsensusnYvAGGTCAv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words76
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyThyroid hormone receptors (NR1A){2.1.2.2}
HGNC11796
EntrezGene7067
UniProt IDTHA_HUMAN
UniProt ACP10827
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.978445
0.0005 5.796375
0.0001 7.456814999999999
GTEx tissue expression atlas THRA expression
ReMap ChIP-seq dataset list THRA datasets
Motifs in JASPAR
PCM
ACGT
016.64326.23914.39326.239
026.42110.7395.75750.596
039.63236.97920.7046.2
0457.9043.43212.1790.0
050.00.55467.2045.757
060.00.068.5324.982
074.9820.00.66467.868
080.068.3115.2040.0
0968.8643.8750.7750.0
1010.73921.58930.55710.629
PWM
ACGT
01-0.9250.339-0.2290.339
02-0.954-0.499-1.0460.977
03-0.5970.6710.113-0.984
041.109-1.462-0.384-2.896
05-2.896-2.4811.256-1.046
06-2.896-2.8961.275-1.167
07-1.167-2.896-2.4151.265
08-2.8961.272-1.131-2.896
091.28-1.369-2.353-2.896
10-0.4990.1530.486-0.508