Model info
Transcription factorThrb
ModelTHB_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
D
Motif rank
0
ConsensusvRGSdYAnhbnRGGhMW
Best auROC (human)
Best auROC (mouse)0.784
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyThyroid hormone receptors (NR1A) {2.1.2.2}
MGIMGI:98743
EntrezGeneGeneID:21834
(SSTAR profile)
UniProt IDTHB_MOUSE
UniProt ACP37242
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.14701
0.0005 5.91191
0.0001 7.501060000000001
GTEx tissue expression atlas Thrb expression
Motifs in JASPAR
PCM
ACGT
01192.076.0171.061.0
02213.05.0196.086.0
0363.013.0399.025.0
0460.066.0319.055.0
05107.072.0101.0220.0
0626.0374.048.052.0
07420.021.021.038.0
0843.0176.0176.0105.0
0985.0161.073.0181.0
1047.0135.0118.0200.0
11125.0107.0178.090.0
12299.09.0172.020.0
1360.02.0425.013.0
1442.025.0428.05.0
15260.0102.045.093.0
1659.0350.054.037.0
17380.032.036.052.0
PWM
ACGT
010.425-0.490.31-0.705
020.528-2.9610.445-0.368
03-0.673-2.1631.152-1.561
04-0.721-0.6280.929-0.805
05-0.153-0.543-0.210.56
06-1.5251.088-0.938-0.86
071.203-1.725-1.725-1.163
08-1.0440.3390.339-0.172
09-0.380.25-0.5290.366
10-0.9580.076-0.0570.465
110.0-0.1530.35-0.324
120.865-2.4840.316-1.77
13-0.721-3.5731.215-2.163
14-1.067-1.5611.222-2.961
150.726-0.201-1.0-0.291
16-0.7371.022-0.823-1.189
171.104-1.328-1.215-0.86