Model info
Transcription factorVDR
ModelVDR_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusvRGKKSAbhRRGKKYR
Best auROC (human)0.9425047641551371
Best auROC (mouse)0.9320976540274004
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)30
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyVitamin D receptor (NR1I){2.1.2.4}
HGNC12679
EntrezGene7421
UniProt IDVDR_HUMAN
UniProt ACP11473
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.22006
0.0005 5.18646
0.0001 7.182410000000001
GTEx tissue expression atlas VDR expression
ReMap ChIP-seq dataset list VDR datasets
Motifs in JASPAR
PCM
ACGT
01139.067.0230.064.0
02233.014.0246.07.0
0359.04.0422.015.0
0426.04.0381.089.0
055.062.093.0340.0
0625.0345.079.051.0
07406.07.054.033.0
0868.0169.0174.089.0
09104.0110.077.0209.0
1072.030.0386.012.0
11237.09.0248.06.0
124.02.0488.06.0
138.04.0184.0304.0
1439.040.098.0323.0
154.0384.030.082.0
16328.042.079.051.0
PWM
ACGT
010.105-0.6130.604-0.658
020.617-2.0960.671-2.694
03-0.737-3.1261.208-2.034
04-1.525-3.1261.106-0.335
05-2.961-0.689-0.2910.993
06-1.5611.007-0.452-0.879
071.17-2.694-0.823-1.298
08-0.5990.2980.327-0.335
09-0.181-0.126-0.4770.509
10-0.543-1.3891.119-2.234
110.634-2.4840.679-2.819
12-3.126-3.5731.353-2.819
13-2.584-3.1260.3830.881
14-1.138-1.114-0.240.942
15-3.1261.114-1.389-0.415
160.957-1.067-0.452-0.879