Model info
Transcription factorVdr
ModelVDR_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusvRGKKSAbhRRGKKYR
Best auROC (human)0.9425047641551371
Best auROC (mouse)0.9320976540274004
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)30
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyVitamin D receptor (NR1I){2.1.2.4}
MGI103076
EntrezGene22337
UniProt IDVDR_MOUSE
UniProt ACP48281
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.34296
0.0005 5.3125599999999995
0.0001 7.31411
GTEx tissue expression atlas Vdr expression
Motifs in JASPAR
PCM
ACGT
01139.067.0230.064.0
02233.014.0246.07.0
0359.04.0422.015.0
0426.04.0381.089.0
055.062.093.0340.0
0625.0345.079.051.0
07406.07.054.033.0
0868.0169.0174.089.0
09104.0110.077.0209.0
1072.030.0386.012.0
11237.09.0248.06.0
124.02.0488.06.0
138.04.0184.0304.0
1439.040.098.0323.0
154.0384.030.082.0
16328.042.079.051.0
PWM
ACGT
010.105-0.6130.604-0.658
020.617-2.0960.671-2.694
03-0.737-3.1261.208-2.034
04-1.525-3.1261.106-0.335
05-2.961-0.689-0.2910.993
06-1.5611.007-0.452-0.879
071.17-2.694-0.823-1.298
08-0.5990.2980.327-0.335
09-0.181-0.126-0.4770.509
10-0.543-1.3891.119-2.234
110.634-2.4840.679-2.819
12-3.126-3.5731.353-2.819
13-2.584-3.1260.3830.881
14-1.138-1.114-0.240.942
15-3.1261.114-1.389-0.415
160.957-1.067-0.452-0.879