Model info
| Transcription factor | Hoxa5 | ||||||||
| Model | HXA5_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YTvATTARYR | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 54 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX5 {3.1.1.5} | ||||||||
| MGI | MGI:96177 | ||||||||
| EntrezGene | GeneID:15402 (SSTAR profile) | ||||||||
| UniProt ID | HXA5_MOUSE | ||||||||
| UniProt AC | P09021 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxa5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4.653 | 16.891 | 2.973 | 27.769 |
| 02 | 0.0 | 13.481 | 0.895 | 37.91 |
| 03 | 15.375 | 8.853 | 24.961 | 3.097 |
| 04 | 52.286 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.497 | 51.788 |
| 06 | 0.0 | 0.0 | 0.0 | 52.286 |
| 07 | 42.662 | 0.0 | 6.264 | 3.36 |
| 08 | 33.853 | 3.171 | 12.775 | 2.486 |
| 09 | 3.37 | 8.172 | 0.895 | 39.848 |
| 10 | 13.059 | 4.151 | 29.632 | 5.444 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.913 | 0.24 | -1.267 | 0.716 |
| 02 | -2.654 | 0.029 | -2.01 | 1.018 |
| 03 | 0.152 | -0.357 | 0.613 | -1.236 |
| 04 | 1.332 | -2.654 | -2.654 | -2.654 |
| 05 | -2.654 | -2.654 | -2.247 | 1.323 |
| 06 | -2.654 | -2.654 | -2.654 | 1.332 |
| 07 | 1.133 | -2.654 | -0.662 | -1.173 |
| 08 | 0.907 | -1.218 | -0.021 | -1.398 |
| 09 | -1.171 | -0.428 | -2.01 | 1.066 |
| 10 | -0.001 | -1.006 | 0.778 | -0.782 |