Model info
| Transcription factor | LYL1 (GeneCards) | ||||||||
| Model | LYL1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vMWbMTGYbhYbbb | ||||||||
| Best auROC (human) | 0.852 | ||||||||
| Best auROC (mouse) | 0.808 | ||||||||
| Peak sets in benchmark (human) | 23 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 453 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Tal / HEN-like factors {1.2.3.1} | ||||||||
| HGNC | HGNC:6734 | ||||||||
| EntrezGene | GeneID:4066 (SSTAR profile) | ||||||||
| UniProt ID | LYL1_HUMAN | ||||||||
| UniProt AC | P12980 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | LYL1 expression | ||||||||
| ReMap ChIP-seq dataset list | LYL1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 93.0 | 200.0 | 92.0 | 68.0 |
| 02 | 66.0 | 315.0 | 12.0 | 60.0 |
| 03 | 290.0 | 23.0 | 21.0 | 119.0 |
| 04 | 26.0 | 57.0 | 222.0 | 148.0 |
| 05 | 59.0 | 331.0 | 20.0 | 43.0 |
| 06 | 48.0 | 0.0 | 3.0 | 402.0 |
| 07 | 1.0 | 80.0 | 367.0 | 5.0 |
| 08 | 3.0 | 135.0 | 82.0 | 233.0 |
| 09 | 28.0 | 94.0 | 100.0 | 231.0 |
| 10 | 94.0 | 100.0 | 59.0 | 200.0 |
| 11 | 20.0 | 232.0 | 54.0 | 147.0 |
| 12 | 43.0 | 263.0 | 50.0 | 97.0 |
| 13 | 64.0 | 85.0 | 82.0 | 222.0 |
| 14 | 54.0 | 124.0 | 172.0 | 103.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.194 | 0.563 | -0.205 | -0.501 |
| 02 | -0.53 | 1.014 | -2.138 | -0.624 |
| 03 | 0.932 | -1.543 | -1.628 | 0.049 |
| 04 | -1.428 | -0.673 | 0.667 | 0.264 |
| 05 | -0.64 | 1.064 | -1.674 | -0.947 |
| 06 | -0.84 | -4.318 | -3.233 | 1.257 |
| 07 | -3.815 | -0.342 | 1.167 | -2.867 |
| 08 | -3.233 | 0.174 | -0.318 | 0.715 |
| 09 | -1.358 | -0.184 | -0.123 | 0.706 |
| 10 | -0.184 | -0.123 | -0.64 | 0.563 |
| 11 | -1.674 | 0.71 | -0.726 | 0.258 |
| 12 | -0.947 | 0.835 | -0.801 | -0.153 |
| 13 | -0.561 | -0.283 | -0.318 | 0.667 |
| 14 | -0.726 | 0.09 | 0.413 | -0.094 |