Model info
| Transcription factor | Nfatc1 | ||||||||
| Model | NFAC1_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vvvWGGAAAvn | ||||||||
| Best auROC (human) | 0.689 | ||||||||
| Best auROC (mouse) | 0.908 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NFAT-related factors {6.1.3} | ||||||||
| TF subfamily | NFATc1 {6.1.3.0.1} | ||||||||
| MGI | MGI:102469 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | NFAC1_MOUSE | ||||||||
| UniProt AC | O88942 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfatc1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 82.0 | 165.0 | 207.0 | 46.0 |
| 02 | 251.0 | 86.0 | 107.0 | 56.0 |
| 03 | 230.0 | 102.0 | 125.0 | 43.0 |
| 04 | 117.0 | 10.0 | 21.0 | 352.0 |
| 05 | 2.0 | 0.0 | 497.0 | 1.0 |
| 06 | 2.0 | 2.0 | 495.0 | 1.0 |
| 07 | 478.0 | 1.0 | 20.0 | 1.0 |
| 08 | 461.0 | 1.0 | 38.0 | 0.0 |
| 09 | 440.0 | 17.0 | 28.0 | 15.0 |
| 10 | 254.0 | 79.0 | 146.0 | 21.0 |
| 11 | 213.0 | 47.0 | 47.0 | 193.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.415 | 0.275 | 0.5 | -0.979 |
| 02 | 0.691 | -0.368 | -0.153 | -0.788 |
| 03 | 0.604 | -0.201 | 0.0 | -1.044 |
| 04 | -0.065 | -2.394 | -1.725 | 1.027 |
| 05 | -3.573 | -4.4 | 1.371 | -3.903 |
| 06 | -3.573 | -3.573 | 1.367 | -3.903 |
| 07 | 1.332 | -3.903 | -1.77 | -3.903 |
| 08 | 1.296 | -3.903 | -1.163 | -4.4 |
| 09 | 1.25 | -1.92 | -1.454 | -2.034 |
| 10 | 0.703 | -0.452 | 0.154 | -1.725 |
| 11 | 0.528 | -0.958 | -0.958 | 0.43 |