Model info
| Transcription factor | Rarb | ||||||||
| Model | RARB_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vAGGTCAnvRv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 25 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B) {2.1.2.1} | ||||||||
| MGI | MGI:97857 | ||||||||
| EntrezGene | GeneID:218772 (SSTAR profile) | ||||||||
| UniProt ID | RARB_MOUSE | ||||||||
| UniProt AC | P22605 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rarb expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.825 | 6.722 | 9.909 | 0.811 |
| 02 | 17.442 | 0.0 | 3.825 | 0.0 |
| 03 | 0.0 | 0.0 | 21.267 | 0.0 |
| 04 | 0.0 | 0.0 | 20.224 | 1.043 |
| 05 | 0.0 | 0.0 | 0.0 | 21.267 |
| 06 | 0.0 | 21.267 | 0.0 | 0.0 |
| 07 | 21.267 | 0.0 | 0.0 | 0.0 |
| 08 | 4.752 | 4.288 | 8.402 | 3.825 |
| 09 | 6.722 | 4.288 | 8.055 | 2.202 |
| 10 | 6.954 | 5.331 | 8.982 | 0.0 |
| 11 | 5.36 | 6.983 | 6.809 | 2.115 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.282 | 0.208 | 0.563 | -1.351 |
| 02 | 1.097 | -2.074 | -0.282 | -2.074 |
| 03 | -2.074 | -2.074 | 1.287 | -2.074 |
| 04 | -2.074 | -2.074 | 1.239 | -1.213 |
| 05 | -2.074 | -2.074 | -2.074 | 1.287 |
| 06 | -2.074 | 1.287 | -2.074 | -2.074 |
| 07 | 1.287 | -2.074 | -2.074 | -2.074 |
| 08 | -0.098 | -0.185 | 0.41 | -0.282 |
| 09 | 0.208 | -0.185 | 0.372 | -0.718 |
| 10 | 0.238 | 0.002 | 0.472 | -2.074 |
| 11 | 0.007 | 0.242 | 0.219 | -0.748 |