Model info
| Transcription factor | Rarg | ||||||||
| Model | RARG_MOUSE.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 8 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vAGGKCAn | ||||||||
| Best auROC (human) | 0.815 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 12 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 394 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B) {2.1.2.1} | ||||||||
| MGI | MGI:97858 | ||||||||
| EntrezGene | GeneID:19411 (SSTAR profile) | ||||||||
| UniProt ID | RARG_MOUSE | ||||||||
| UniProt AC | P18911 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rarg expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 111.0 | 131.0 | 137.0 | 14.0 |
| 02 | 292.0 | 4.0 | 95.0 | 2.0 |
| 03 | 2.0 | 0.0 | 390.0 | 1.0 |
| 04 | 2.0 | 1.0 | 376.0 | 14.0 |
| 05 | 31.0 | 4.0 | 72.0 | 286.0 |
| 06 | 2.0 | 381.0 | 10.0 | 0.0 |
| 07 | 383.0 | 3.0 | 6.0 | 1.0 |
| 08 | 40.0 | 109.0 | 204.0 | 40.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.12 | 0.284 | 0.328 | -1.862 |
| 02 | 1.079 | -2.899 | -0.033 | -3.352 |
| 03 | -3.352 | -4.202 | 1.367 | -3.689 |
| 04 | -3.352 | -3.689 | 1.331 | -1.862 |
| 05 | -1.122 | -2.899 | -0.305 | 1.059 |
| 06 | -3.352 | 1.344 | -2.161 | -4.202 |
| 07 | 1.349 | -3.1 | -2.589 | -3.689 |
| 08 | -0.877 | 0.102 | 0.723 | -0.877 |