Model info
| Transcription factor | Runx3 | ||||||||
| Model | RUNX3_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbhTGTGGTYdb | ||||||||
| Best auROC (human) | 0.996 | ||||||||
| Best auROC (mouse) | 0.975 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 27 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Runt-related factors {6.4.1} | ||||||||
| TF subfamily | Runx3 (PEBP2alphaC, CBF-alpha3, AML-2) {6.4.1.0.3} | ||||||||
| MGI | MGI:102672 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | RUNX3_MOUSE | ||||||||
| UniProt AC | Q64131 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Runx3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 70.0 | 94.0 | 220.0 | 116.0 |
| 02 | 33.0 | 114.0 | 232.0 | 121.0 |
| 03 | 73.0 | 270.0 | 30.0 | 127.0 |
| 04 | 9.0 | 7.0 | 5.0 | 479.0 |
| 05 | 1.0 | 2.0 | 496.0 | 1.0 |
| 06 | 21.0 | 66.0 | 1.0 | 412.0 |
| 07 | 2.0 | 1.0 | 495.0 | 2.0 |
| 08 | 0.0 | 3.0 | 496.0 | 1.0 |
| 09 | 0.0 | 49.0 | 42.0 | 409.0 |
| 10 | 17.0 | 126.0 | 44.0 | 313.0 |
| 11 | 163.0 | 27.0 | 93.0 | 217.0 |
| 12 | 64.0 | 128.0 | 207.0 | 101.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.57 | -0.281 | 0.56 | -0.074 |
| 02 | -1.298 | -0.091 | 0.613 | -0.032 |
| 03 | -0.529 | 0.763 | -1.389 | 0.016 |
| 04 | -2.484 | -2.694 | -2.961 | 1.334 |
| 05 | -3.903 | -3.573 | 1.369 | -3.903 |
| 06 | -1.725 | -0.628 | -3.903 | 1.184 |
| 07 | -3.573 | -3.903 | 1.367 | -3.573 |
| 08 | -4.4 | -3.325 | 1.369 | -3.903 |
| 09 | -4.4 | -0.918 | -1.067 | 1.177 |
| 10 | -1.92 | 0.008 | -1.022 | 0.91 |
| 11 | 0.263 | -1.489 | -0.291 | 0.546 |
| 12 | -0.658 | 0.023 | 0.5 | -0.21 |