Transcription factor | Sall1 | ||||||||
Model | SALL1_MOUSE.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 19 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | nhhTYWRCAWhWvWRhdvn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.801 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 499 | ||||||||
TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
TF subfamily | Sal-like factors {2.3.4.3} | ||||||||
MGI | MGI:1889585 | ||||||||
EntrezGene | |||||||||
UniProt ID | SALL1_MOUSE | ||||||||
UniProt AC | Q9ER74 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Sall1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 58.0 | 43.0 | 31.0 | 21.0 | 40.0 | 28.0 | 6.0 | 27.0 | 33.0 | 32.0 | 6.0 | 7.0 | 64.0 | 49.0 | 27.0 | 27.0 |
02 | 109.0 | 15.0 | 26.0 | 45.0 | 117.0 | 21.0 | 5.0 | 9.0 | 34.0 | 14.0 | 13.0 | 9.0 | 39.0 | 16.0 | 13.0 | 14.0 |
03 | 19.0 | 10.0 | 12.0 | 258.0 | 10.0 | 3.0 | 1.0 | 52.0 | 3.0 | 0.0 | 8.0 | 46.0 | 6.0 | 3.0 | 1.0 | 67.0 |
04 | 7.0 | 13.0 | 2.0 | 16.0 | 2.0 | 6.0 | 3.0 | 5.0 | 0.0 | 11.0 | 2.0 | 9.0 | 32.0 | 89.0 | 9.0 | 293.0 |
05 | 13.0 | 2.0 | 3.0 | 23.0 | 43.0 | 2.0 | 2.0 | 72.0 | 5.0 | 0.0 | 0.0 | 11.0 | 122.0 | 6.0 | 15.0 | 180.0 |
06 | 55.0 | 15.0 | 97.0 | 16.0 | 2.0 | 4.0 | 3.0 | 1.0 | 7.0 | 4.0 | 8.0 | 1.0 | 78.0 | 17.0 | 181.0 | 10.0 |
07 | 24.0 | 113.0 | 0.0 | 5.0 | 5.0 | 35.0 | 0.0 | 0.0 | 30.0 | 245.0 | 3.0 | 11.0 | 14.0 | 13.0 | 1.0 | 0.0 |
08 | 73.0 | 0.0 | 0.0 | 0.0 | 386.0 | 6.0 | 2.0 | 12.0 | 2.0 | 1.0 | 0.0 | 1.0 | 11.0 | 0.0 | 5.0 | 0.0 |
09 | 87.0 | 28.0 | 23.0 | 334.0 | 4.0 | 0.0 | 0.0 | 3.0 | 1.0 | 1.0 | 0.0 | 5.0 | 2.0 | 0.0 | 1.0 | 10.0 |
10 | 28.0 | 27.0 | 14.0 | 25.0 | 19.0 | 5.0 | 3.0 | 2.0 | 11.0 | 3.0 | 8.0 | 2.0 | 141.0 | 62.0 | 42.0 | 107.0 |
11 | 119.0 | 13.0 | 5.0 | 62.0 | 42.0 | 3.0 | 5.0 | 47.0 | 37.0 | 4.0 | 0.0 | 26.0 | 36.0 | 24.0 | 6.0 | 70.0 |
12 | 38.0 | 122.0 | 42.0 | 32.0 | 11.0 | 22.0 | 8.0 | 3.0 | 1.0 | 10.0 | 2.0 | 3.0 | 34.0 | 64.0 | 92.0 | 15.0 |
13 | 52.0 | 14.0 | 3.0 | 15.0 | 157.0 | 15.0 | 1.0 | 45.0 | 103.0 | 28.0 | 4.0 | 9.0 | 38.0 | 4.0 | 1.0 | 10.0 |
14 | 307.0 | 11.0 | 28.0 | 4.0 | 45.0 | 4.0 | 8.0 | 4.0 | 2.0 | 3.0 | 4.0 | 0.0 | 43.0 | 4.0 | 17.0 | 15.0 |
15 | 130.0 | 50.0 | 21.0 | 196.0 | 9.0 | 6.0 | 1.0 | 6.0 | 16.0 | 16.0 | 8.0 | 17.0 | 5.0 | 5.0 | 1.0 | 12.0 |
16 | 78.0 | 5.0 | 66.0 | 11.0 | 48.0 | 11.0 | 12.0 | 6.0 | 12.0 | 6.0 | 7.0 | 6.0 | 98.0 | 19.0 | 87.0 | 27.0 |
17 | 42.0 | 71.0 | 97.0 | 26.0 | 11.0 | 14.0 | 3.0 | 13.0 | 36.0 | 53.0 | 68.0 | 15.0 | 12.0 | 17.0 | 16.0 | 5.0 |
18 | 42.0 | 22.0 | 23.0 | 14.0 | 81.0 | 30.0 | 18.0 | 26.0 | 54.0 | 40.0 | 60.0 | 30.0 | 16.0 | 15.0 | 14.0 | 14.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.615 | 0.318 | -0.006 | -0.39 | 0.246 | -0.106 | -1.598 | -0.142 | 0.056 | 0.025 | -1.598 | -1.452 | 0.713 | 0.447 | -0.142 | -0.142 |
02 | 1.243 | -0.719 | -0.179 | 0.363 | 1.313 | -0.39 | -1.768 | -1.213 | 0.085 | -0.786 | -0.858 | -1.213 | 0.221 | -0.656 | -0.858 | -0.786 |
03 | -0.488 | -1.112 | -0.936 | 2.102 | -1.112 | -2.232 | -3.124 | 0.506 | -2.232 | -4.398 | -1.326 | 0.385 | -1.598 | -2.232 | -3.124 | 0.758 |
04 | -1.452 | -0.858 | -2.582 | -0.656 | -2.582 | -1.598 | -2.232 | -1.768 | -4.398 | -1.02 | -2.582 | -1.213 | 0.025 | 1.041 | -1.213 | 2.229 |
05 | -0.858 | -2.582 | -2.232 | -0.3 | 0.318 | -2.582 | -2.582 | 0.83 | -1.768 | -4.398 | -4.398 | -1.02 | 1.355 | -1.598 | -0.719 | 1.743 |
06 | 0.562 | -0.719 | 1.126 | -0.656 | -2.582 | -1.973 | -2.232 | -3.124 | -1.452 | -1.973 | -1.326 | -3.124 | 0.909 | -0.597 | 1.748 | -1.112 |
07 | -0.258 | 1.278 | -4.398 | -1.768 | -1.768 | 0.114 | -4.398 | -4.398 | -0.038 | 2.05 | -2.232 | -1.02 | -0.786 | -0.858 | -3.124 | -4.398 |
08 | 0.843 | -4.398 | -4.398 | -4.398 | 2.504 | -1.598 | -2.582 | -0.936 | -2.582 | -3.124 | -4.398 | -3.124 | -1.02 | -4.398 | -1.768 | -4.398 |
09 | 1.018 | -0.106 | -0.3 | 2.36 | -1.973 | -4.398 | -4.398 | -2.232 | -3.124 | -3.124 | -4.398 | -1.768 | -2.582 | -4.398 | -3.124 | -1.112 |
10 | -0.106 | -0.142 | -0.786 | -0.218 | -0.488 | -1.768 | -2.232 | -2.582 | -1.02 | -2.232 | -1.326 | -2.582 | 1.499 | 0.681 | 0.294 | 1.224 |
11 | 1.33 | -0.858 | -1.768 | 0.681 | 0.294 | -2.232 | -1.768 | 0.406 | 0.169 | -1.973 | -4.398 | -0.179 | 0.142 | -0.258 | -1.598 | 0.802 |
12 | 0.195 | 1.355 | 0.294 | 0.025 | -1.02 | -0.344 | -1.326 | -2.232 | -3.124 | -1.112 | -2.582 | -2.232 | 0.085 | 0.713 | 1.074 | -0.719 |
13 | 0.506 | -0.786 | -2.232 | -0.719 | 1.606 | -0.719 | -3.124 | 0.363 | 1.186 | -0.106 | -1.973 | -1.213 | 0.195 | -1.973 | -3.124 | -1.112 |
14 | 2.276 | -1.02 | -0.106 | -1.973 | 0.363 | -1.973 | -1.326 | -1.973 | -2.582 | -2.232 | -1.973 | -4.398 | 0.318 | -1.973 | -0.597 | -0.719 |
15 | 1.418 | 0.467 | -0.39 | 1.828 | -1.213 | -1.598 | -3.124 | -1.598 | -0.656 | -0.656 | -1.326 | -0.597 | -1.768 | -1.768 | -3.124 | -0.936 |
16 | 0.909 | -1.768 | 0.743 | -1.02 | 0.427 | -1.02 | -0.936 | -1.598 | -0.936 | -1.598 | -1.452 | -1.598 | 1.137 | -0.488 | 1.018 | -0.142 |
17 | 0.294 | 0.816 | 1.126 | -0.179 | -1.02 | -0.786 | -2.232 | -0.858 | 0.142 | 0.525 | 0.773 | -0.719 | -0.936 | -0.597 | -0.656 | -1.768 |
18 | 0.294 | -0.344 | -0.3 | -0.786 | 0.947 | -0.038 | -0.541 | -0.179 | 0.544 | 0.246 | 0.648 | -0.038 | -0.656 | -0.719 | -0.786 | -0.786 |