Check the newest release v12
Model info
Transcription factorSOX4
(GeneCards)
ModelSOX4_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
B
Motif rank
0
ConsensusbbYCTTTGTYYbb
Best auROC (human)0.67
Best auROC (mouse)0.976
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words350
TF familySOX-related factors {4.1.1}
TF subfamilyGroup C {4.1.1.3}
HGNCHGNC:11200
EntrezGeneGeneID:6659
(SSTAR profile)
UniProt IDSOX4_HUMAN
UniProt ACQ06945
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.05272
0.0005 12.078725
0.0001 16.090775
GTEx tissue expression atlas SOX4 expression
ReMap ChIP-seq dataset list SOX4 datasets
Motifs in JASPAR
MA0867.1 (SOX4; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
016.09.015.06.08.030.024.031.03.052.037.021.00.033.024.051.0
020.07.09.01.00.073.021.030.01.050.022.027.00.056.011.042.0
030.01.00.00.00.0149.00.037.02.056.00.05.01.086.00.013.0
040.00.00.03.028.04.03.0257.00.00.00.00.013.02.01.039.0
051.02.01.037.00.00.00.06.00.01.03.00.01.07.013.0278.0
060.00.01.01.01.01.02.06.00.05.00.012.05.01.01.0314.0
070.02.04.00.00.01.06.00.00.00.04.00.00.029.0302.02.0
080.00.00.00.04.04.01.023.00.03.08.0305.00.00.01.01.0
090.02.01.01.01.01.01.04.00.01.02.07.02.0106.037.0184.0
100.02.00.01.05.070.02.033.01.023.08.09.03.0138.026.029.0
110.02.04.03.019.090.025.099.01.017.07.011.07.020.032.013.0
123.010.010.04.019.051.025.034.012.023.023.010.08.056.035.027.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.251-0.865-0.37-1.251-0.9780.3110.0910.344-1.8880.8560.519-0.04-4.1070.4060.0910.837
02-4.107-1.105-0.865-2.79-4.1071.194-0.040.311-2.790.8170.0060.207-4.1070.93-0.6710.644
03-4.107-2.79-4.107-4.107-4.1071.904-4.1070.519-2.2410.93-4.107-1.422-2.791.357-4.107-0.509
04-4.107-4.107-4.107-1.8880.243-1.628-1.8882.449-4.107-4.107-4.107-4.107-0.509-2.241-2.790.571
05-2.79-2.241-2.790.519-4.107-4.107-4.107-1.251-4.107-2.79-1.888-4.107-2.79-1.105-0.5092.527
06-4.107-4.107-2.79-2.79-2.79-2.79-2.241-1.251-4.107-1.422-4.107-0.587-1.422-2.79-2.792.649
07-4.107-2.241-1.628-4.107-4.107-2.79-1.251-4.107-4.107-4.107-1.628-4.107-4.1070.2782.61-2.241
08-4.107-4.107-4.107-4.107-1.628-1.628-2.790.049-4.107-1.888-0.9782.62-4.107-4.107-2.79-2.79
09-4.107-2.241-2.79-2.79-2.79-2.79-2.79-1.628-4.107-2.79-2.241-1.105-2.2411.5650.5192.115
10-4.107-2.241-4.107-2.79-1.4221.152-2.2410.406-2.790.049-0.978-0.865-1.8881.8280.170.278
11-4.107-2.241-1.628-1.888-0.1381.4020.1311.497-2.79-0.247-1.105-0.671-1.105-0.0880.375-0.509
12-1.888-0.763-0.763-1.628-0.1380.8370.1310.435-0.5870.0490.049-0.763-0.9780.930.4640.207