Model info
| Transcription factor | Nr5a1 | ||||||||
| Model | STF1_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbYCAAGGYCW | ||||||||
| Best auROC (human) | 0.759 | ||||||||
| Best auROC (mouse) | 0.898 | ||||||||
| Peak sets in benchmark (human) | 1 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | FTZ-F1-related receptors (NR5) {2.1.5} | ||||||||
| TF subfamily | FTZ-F1 (SF-1) (NR5A1) {2.1.5.0.1} | ||||||||
| MGI | MGI:1346833 | ||||||||
| EntrezGene | GeneID:26423 (SSTAR profile) | ||||||||
| UniProt ID | STF1_MOUSE | ||||||||
| UniProt AC | P33242 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr5a1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 67.0 | 123.0 | 210.0 | 100.0 |
| 02 | 27.0 | 196.0 | 90.0 | 187.0 |
| 03 | 28.0 | 220.0 | 14.0 | 238.0 |
| 04 | 3.0 | 459.0 | 28.0 | 10.0 |
| 05 | 420.0 | 58.0 | 14.0 | 8.0 |
| 06 | 459.0 | 2.0 | 36.0 | 3.0 |
| 07 | 20.0 | 1.0 | 474.0 | 5.0 |
| 08 | 13.0 | 20.0 | 457.0 | 10.0 |
| 09 | 51.0 | 225.0 | 19.0 | 205.0 |
| 10 | 11.0 | 450.0 | 4.0 | 35.0 |
| 11 | 378.0 | 33.0 | 37.0 | 52.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.613 | -0.016 | 0.514 | -0.22 |
| 02 | -1.489 | 0.445 | -0.324 | 0.399 |
| 03 | -1.454 | 0.56 | -2.096 | 0.638 |
| 04 | -3.325 | 1.292 | -1.454 | -2.394 |
| 05 | 1.203 | -0.754 | -2.096 | -2.584 |
| 06 | 1.292 | -3.573 | -1.215 | -3.325 |
| 07 | -1.77 | -3.903 | 1.324 | -2.961 |
| 08 | -2.163 | -1.77 | 1.287 | -2.394 |
| 09 | -0.879 | 0.582 | -1.818 | 0.49 |
| 10 | -2.311 | 1.272 | -3.126 | -1.242 |
| 11 | 1.098 | -1.298 | -1.189 | -0.86 |