Model info
| Transcription factor | Znf335 | ||||||||
| Model | ZN335_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 7 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | YGCCTGW | ||||||||
| Best auROC (human) | 0.892 | ||||||||
| Best auROC (mouse) | 0.995 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 123 | ||||||||
| TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
| TF subfamily | unclassified {2.3.4.0} | ||||||||
| MGI | MGI:2682313 | ||||||||
| EntrezGene | GeneID:329559 (SSTAR profile) | ||||||||
| UniProt ID | ZN335_MOUSE | ||||||||
| UniProt AC | A2A5K6 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Znf335 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 10.0 | 45.0 | 0.0 | 68.0 |
| 02 | 4.0 | 0.0 | 110.0 | 9.0 |
| 03 | 1.0 | 122.0 | 0.0 | 0.0 |
| 04 | 1.0 | 120.0 | 0.0 | 2.0 |
| 05 | 1.0 | 0.0 | 0.0 | 122.0 |
| 06 | 9.0 | 1.0 | 105.0 | 8.0 |
| 07 | 61.0 | 15.0 | 2.0 | 45.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.048 | 0.369 | -3.279 | 0.773 |
| 02 | -1.815 | -3.279 | 1.247 | -1.142 |
| 03 | -2.674 | 1.35 | -3.279 | -3.279 |
| 04 | -2.674 | 1.333 | -3.279 | -2.3 |
| 05 | -2.674 | -3.279 | -3.279 | 1.35 |
| 06 | -1.142 | -2.674 | 1.201 | -1.245 |
| 07 | 0.666 | -0.679 | -2.3 | 0.369 |